Daryl Somers' wheat EST assembly for the WheatSNP project, 20 June 2002.
See http://wheat.pw.usda.gov/ITMI/2002/WheatSNP.html for information about
the WheatSNP project.

The assembly includes 5,343 contigs that have 7 or more ESTs, ripe for
SNP-picking!  The list of these is below.

For those who want The Whole Thing, click on 0.WheatAssembly.20jun2002.tar.gz.
It's 203 MB uncompressed.

- Dave Matthews, matthews@greengenes.cit.cornell.edu


> Date: Fri, 21 Jun 2002 17:12:27 -0400
> From: "Daryl Somers" 
> Subject: Wheat EST assembly is done !!
> 
> number of ESTs - 186,257
> 
> number of singletons - 26,489
> 
> number of contigs - 23,395
> 
> The assembly was done using Paracel software - clustering with PCP version 
> 2.2.5, assembly with CAP4 2.2.5.  All parameters for clustering and 
> assembly were default values except for cap4 which had an overlap length 
> of 40 and a percent identity of 95%. 


Contigs containing at least seven ESTs:
contigs.4-1 
contigs.4-3 
contigs.8-1 
contigs.12-1 
contigs.14-1 
contigs.19-1 
contigs.37-2 
contigs.42-1 
contigs.44-1 
contigs.52-1 
contigs.54-1 
contigs.60-1 
contigs.71-2 
contigs.72-2 
contigs.73-1 
contigs.80-1 
contigs.87-2 
contigs.99-1 
contigs.102-1 
contigs.102-2 
contigs.102-3 
contigs.103-1 
contigs.116-1 
contigs.119-1 
contigs.126-1 
contigs.148-1 
contigs.152-1 
contigs.154-1 
contigs.167-1 
contigs.170-1 
contigs.174-1 
contigs.176-1 
contigs.179-1 
contigs.181-1 
contigs.181-2 
contigs.181-4 
contigs.184-1 
contigs.185-2 
contigs.188-1 
contigs.189-1 
contigs.203-1 
contigs.208-1 
contigs.219-1 
contigs.221-1 
contigs.226-2 
contigs.229-1 
contigs.230-2 
contigs.238-1 
contigs.261-1 
contigs.271-2 
contigs.276-1 
contigs.276-2 
contigs.285-1 
contigs.289-2 
contigs.306-1 
contigs.312-1 
contigs.314-1 
contigs.318-1 
contigs.319-1 
contigs.348-1 
contigs.357-1 
contigs.382-1 
contigs.384-1 
contigs.391-1 
contigs.392-1 
contigs.403-1 
contigs.406-1 
contigs.409-1 
contigs.414-1 
contigs.430-1 
contigs.437-1 
contigs.458-1 
contigs.475-1 
contigs.482-1 
contigs.485-1 
contigs.486-1 
contigs.492-1 
contigs.493-1 
contigs.508-1 
contigs.521-1 
contigs.523-1 
contigs.528-1 
contigs.531-1 
contigs.545-1 
contigs.547-1 
contigs.557-1 
contigs.574-1 
contigs.578-1 
contigs.580-1 
contigs.582-1 
contigs.585-1 
contigs.598-1 
contigs.628-1 
contigs.643-1 
contigs.654-1 
contigs.660-1 
contigs.660-3 
contigs.673-1 
contigs.680-1 
contigs.688-1 
contigs.694-1 
contigs.705-1 
contigs.713-3 
contigs.716-2 
contigs.717-1 
contigs.720-1 
contigs.722-1 
contigs.734-1 
contigs.734-2 
contigs.745-1 
contigs.749-1 
contigs.757-1 
contigs.758-1 
contigs.760-1 
contigs.763-1 
contigs.771-1 
contigs.780-1 
contigs.783-1 
contigs.805-1 
contigs.817-1 
contigs.823-1 
contigs.829-1 
contigs.829-2 
contigs.845-3 
contigs.867-1 
contigs.872-1 
contigs.878-1 
contigs.883-1 
contigs.887-1 
contigs.889-1 
contigs.901-1 
contigs.903-1 
contigs.917-1 
contigs.920-1 
contigs.920-2 
contigs.922-2 
contigs.934-1 
contigs.950-1 
contigs.961-2 
contigs.962-1 
contigs.998-1 
contigs.1003-1 
contigs.1007-1 
contigs.1015-1 
contigs.1022-1 
contigs.1034-1 
contigs.1036-1 
contigs.1040-1 
contigs.1042-1 
contigs.1043-3 
contigs.1044-1 
contigs.1048-1 
contigs.1050-1 
contigs.1055-1 
contigs.1073-1 
contigs.1074-1 
contigs.1076-1 
contigs.1087-1 
contigs.1088-1 
contigs.1109-1 
contigs.1112-1 
contigs.1119-1 
contigs.1138-1 
contigs.1147-1 
contigs.1156-1 
contigs.1169-1 
contigs.1183-1 
contigs.1186-1 
contigs.1188-1 
contigs.1208-1 
contigs.1218-1 
contigs.1228-1 
contigs.1247-1 
contigs.1267-1 
contigs.1275-1 
contigs.1277-1 
contigs.1301-1 
contigs.1310-1 
contigs.1319-2 
contigs.1323-1 
contigs.1324-1 
contigs.1337-1 
contigs.1342-1 
contigs.1358-3 
contigs.1358-5 
contigs.1364-3 
contigs.1377-1 
contigs.1408-1 
contigs.1408-3 
contigs.1408-8 
contigs.1408-9 
contigs.1416-1 
contigs.1419-1 
contigs.1438-1 
contigs.1442-1 
contigs.1442-2 
contigs.1454-1 
contigs.1499-1 
contigs.1510-1 
contigs.1530-1 
contigs.1542-1 
contigs.1550-1 
contigs.1553-2 
contigs.1561-2 
contigs.1574-1 
contigs.1577-2 
contigs.1585-1 
contigs.1593-1 
contigs.1609-2 
contigs.1609-3 
contigs.1610-1 
contigs.1618-1 
contigs.1620-1 
contigs.1623-1 
contigs.1631-1 
contigs.1631-2 
contigs.1632-2 
contigs.1636-2 
contigs.1636-3 
contigs.1636-4 
contigs.1636-6 
contigs.1636-7 
contigs.1636-9 
contigs.1636-12 
contigs.1636-13 
contigs.1636-15 
contigs.1636-17 
contigs.1636-18 
contigs.1636-20 
contigs.1636-23 
contigs.1636-24 
contigs.1636-25 
contigs.1636-26 
contigs.1636-28 
contigs.1636-29 
contigs.1636-30 
contigs.1636-31 
contigs.1636-32 
contigs.1636-33 
contigs.1636-34 
contigs.1636-37 
contigs.1636-40 
contigs.1636-42 
contigs.1636-43 
contigs.1636-44 
contigs.1636-45 
contigs.1636-46 
contigs.1636-52 
contigs.1636-54 
contigs.1636-55 
contigs.1636-56 
contigs.1636-61 
contigs.1636-63 
contigs.1636-69 
contigs.1636-70 
contigs.1636-71 
contigs.1636-72 
contigs.1636-73 
contigs.1636-74 
contigs.1636-75 
contigs.1636-76 
contigs.1636-77 
contigs.1636-78 
contigs.1636-79 
contigs.1636-82 
contigs.1636-84 
contigs.1636-85 
contigs.1636-86 
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contigs.1636-89 
contigs.1636-91 
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contigs.1636-98 
contigs.1636-99 
contigs.1636-100 
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contigs.1636-103 
contigs.1636-106 
contigs.1636-108 
contigs.1636-110 
contigs.1636-111 
contigs.1636-112 
contigs.1636-113 
contigs.1636-114 
contigs.1636-117 
contigs.1636-119 
contigs.1636-120 
contigs.1636-121 
contigs.1636-122 
contigs.1636-124 
contigs.1636-126 
contigs.1636-127 
contigs.1636-129 
contigs.1636-130 
contigs.1636-131 
contigs.1636-132 
contigs.1636-133 
contigs.1636-134 
contigs.1636-136 
contigs.1636-139 
contigs.1636-141 
contigs.1636-146 
contigs.1636-148 
contigs.1636-151 
contigs.1636-152 
contigs.1636-155 
contigs.1636-156 
contigs.1636-157 
contigs.1636-159 
contigs.1636-162 
contigs.1636-163 
contigs.1636-164 
contigs.1636-165 
contigs.1636-167 
contigs.1636-169 
contigs.1636-170 
contigs.1636-174 
contigs.1636-177 
contigs.1636-185 
contigs.1636-189 
contigs.1636-190 
contigs.1636-191 
contigs.1636-192 
contigs.1636-193 
contigs.1636-194 
contigs.1636-196 
contigs.1636-202 
contigs.1636-203 
contigs.1636-204 
contigs.1636-208 
contigs.1636-209 
contigs.1636-211 
contigs.1636-213 
contigs.1636-221 
contigs.1636-223 
contigs.1636-224 
contigs.1636-225 
contigs.1636-227 
contigs.1636-233 
contigs.1636-235 
contigs.1636-238 
contigs.1636-240 
contigs.1636-242 
contigs.1636-244 
contigs.1636-245 
contigs.1636-246 
contigs.1636-250 
contigs.1636-257 
contigs.1636-258 
contigs.1636-259 
contigs.1636-262 
contigs.1636-265 
contigs.1636-266 
contigs.1636-268 
contigs.1636-274 
contigs.1636-275 
contigs.1636-277 
contigs.1636-278 
contigs.1636-279 
contigs.1636-281 
contigs.1636-284 
contigs.1636-285 
contigs.1636-292 
contigs.1636-296 
contigs.1636-298 
contigs.1636-299 
contigs.1636-300 
contigs.1636-301 
contigs.1636-302 
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contigs.1636-305 
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contigs.1636-308 
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contigs.1636-311 
contigs.1636-314 
contigs.1636-323 
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contigs.1636-327 
contigs.1636-330 
contigs.1636-331 
contigs.1636-334 
contigs.1636-338 
contigs.1636-342 
contigs.1636-343 
contigs.1636-344 
contigs.1636-348 
contigs.1636-350 
contigs.1636-351 
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contigs.1636-354 
contigs.1636-355 
contigs.1636-356 
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contigs.1636-375 
contigs.1636-376 
contigs.1636-377 
contigs.1636-379 
contigs.1636-381 
contigs.1636-382 
contigs.1636-383 
contigs.1636-384 
contigs.1636-386 
contigs.1636-396 
contigs.1636-397 
contigs.1636-398 
contigs.1636-400 
contigs.1636-401 
contigs.1636-402 
contigs.1636-405 
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contigs.1636-411 
contigs.1636-412 
contigs.1636-414 
contigs.1636-415 
contigs.1636-417 
contigs.1636-418 
contigs.1636-419 
contigs.1636-421 
contigs.1636-428 
contigs.1636-435 
contigs.1636-440 
contigs.1636-441 
contigs.1636-445 
contigs.1636-448 
contigs.1636-450 
contigs.1636-458 
contigs.1636-460 
contigs.1636-463 
contigs.1636-464 
contigs.1636-465 
contigs.1636-468 
contigs.1636-470 
contigs.1636-473 
contigs.1636-474 
contigs.1636-475 
contigs.1636-478 
contigs.1636-480 
contigs.1636-484 
contigs.1636-485 
contigs.1636-486 
contigs.1636-487 
contigs.1636-488 
contigs.1636-489 
contigs.1636-490 
contigs.1636-491 
contigs.1636-494 
contigs.1636-495 
contigs.1636-497 
contigs.1636-500 
contigs.1636-505 
contigs.1636-506 
contigs.1636-510 
contigs.1636-517 
contigs.1636-520 
contigs.1636-521 
contigs.1636-523 
contigs.1636-524 
contigs.1636-529 
contigs.1636-531 
contigs.1636-532 
contigs.1636-535 
contigs.1636-537 
contigs.1636-538 
contigs.1636-555 
contigs.1636-557 
contigs.1636-559 
contigs.1636-560 
contigs.1636-562 
contigs.1636-569 
contigs.1636-570 
contigs.1636-572 
contigs.1636-573 
contigs.1636-575 
contigs.1636-584 
contigs.1636-585 
contigs.1636-591 
contigs.1636-593 
contigs.1636-595 
contigs.1636-598 
contigs.1636-600 
contigs.1636-602 
contigs.1636-604 
contigs.1636-605 
contigs.1636-606 
contigs.1636-612 
contigs.1636-614 
contigs.1636-615 
contigs.1636-616 
contigs.1636-617 
contigs.1636-620 
contigs.1636-624 
contigs.1636-625 
contigs.1636-628 
contigs.1636-632 
contigs.1636-633 
contigs.1636-636 
contigs.1636-640 
contigs.1636-641 
contigs.1636-642 
contigs.1636-643 
contigs.1636-645 
contigs.1636-646 
contigs.1636-647 
contigs.1636-649 
contigs.1636-650 
contigs.1636-652 
contigs.1636-657 
contigs.1636-660 
contigs.1636-665 
contigs.1636-667 
contigs.1636-668 
contigs.1636-670 
contigs.1636-674 
contigs.1636-676 
contigs.1636-678 
contigs.1636-679 
contigs.1636-684 
contigs.1636-685 
contigs.1636-686 
contigs.1636-687 
contigs.1636-688 
contigs.1636-689 
contigs.1636-691 
contigs.1636-696 
contigs.1636-700 
contigs.1636-704 
contigs.1636-705 
contigs.1636-706 
contigs.1636-707 
contigs.1636-708 
contigs.1636-709 
contigs.1636-713 
contigs.1636-714 
contigs.1636-716 
contigs.1636-722 
contigs.1636-723 
contigs.1636-724 
contigs.1636-725 
contigs.1636-726 
contigs.1636-729 
contigs.1636-730 
contigs.1636-731 
contigs.1636-732 
contigs.1636-733 
contigs.1636-734 
contigs.1636-735 
contigs.1636-740 
contigs.1636-747 
contigs.1636-750 
contigs.1636-751 
contigs.1636-752 
contigs.1636-756 
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contigs.1636-759 
contigs.1636-764 
contigs.1636-771 
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contigs.1636-786 
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contigs.1636-792 
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contigs.1636-797 
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contigs.1636-799 
contigs.1636-800 
contigs.1636-803 
contigs.1636-804 
contigs.1636-805 
contigs.1636-807 
contigs.1636-809 
contigs.1636-814 
contigs.1636-819 
contigs.1636-826 
contigs.1636-829 
contigs.1636-831 
contigs.1636-838 
contigs.1636-841 
contigs.1636-844 
contigs.1636-845 
contigs.1636-846 
contigs.1636-847 
contigs.1636-849 
contigs.1636-850 
contigs.1636-853 
contigs.1636-854 
contigs.1636-856 
contigs.1636-857 
contigs.1636-859 
contigs.1636-860 
contigs.1636-862 
contigs.1636-863 
contigs.1636-865 
contigs.1636-866 
contigs.1636-869 
contigs.1636-870 
contigs.1636-871 
contigs.1636-874 
contigs.1636-877 
contigs.1636-880 
contigs.1636-881 
contigs.1636-882 
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contigs.1636-929 
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contigs.1636-979 
contigs.1636-981 
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contigs.1636-987 
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contigs.1636-1003 
contigs.1636-1004 
contigs.1636-1006 
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contigs.1636-1009 
contigs.1636-1010 
contigs.1636-1011 
contigs.1636-1013 
contigs.1636-1014 
contigs.1636-1015 
contigs.1636-1016 
contigs.1636-1019 
contigs.1636-1021 
contigs.1636-1023 
contigs.1636-1026 
contigs.1636-1031 
contigs.1636-1032 
contigs.1636-1033 
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contigs.1636-1035 
contigs.1636-1036 
contigs.1636-1039 
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contigs.1636-1050 
contigs.1636-1051 
contigs.1636-1054 
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contigs.1636-1066 
contigs.1636-1069 
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contigs.1636-1078 
contigs.1636-1079 
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contigs.1636-1096 
contigs.1636-1103 
contigs.1636-1104 
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contigs.1636-1112 
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contigs.1636-1199 
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contigs.1636-1337 
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contigs.1636-1347 
contigs.1636-1348 
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contigs.1636-1350 
contigs.1636-1351 
contigs.1636-1353 
contigs.1636-1359 
contigs.1636-1362 
contigs.1636-1363 
contigs.1636-1365 
contigs.1636-1366 
contigs.1636-1368 
contigs.1636-1369 
contigs.1636-1371 
contigs.1636-1372 
contigs.1636-1373 
contigs.1636-1374 
contigs.1636-1375 
contigs.1636-1376 
contigs.1636-1378 
contigs.1636-1380 
contigs.1636-1383 
contigs.1636-1384 
contigs.1636-1386 
contigs.1636-1389 
contigs.1636-1390 
contigs.1636-1397 
contigs.1636-1398 
contigs.1636-1400 
contigs.1636-1401 
contigs.1636-1405 
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